This is a great book. It addresses the question of what makes us human at a fundamental level that I hadn't devoted much thought to before - on a biological level, we define humans as being Homo sapiens. But the problem is that we aren't entirely Homo sapiens. Higham, who is a top academic archaeologist at the forefront of the most exciting developments in dating and genetic research, narrates our complicated genetic history from the perspective of the researchers who have been making these amazing discoveries.
It seems as though Higham is obsessed with Denisovans - over 1/3 of the book is devoted to explaining research, much of it his own, on this lost relative of ours. The research is pretty fascinating because it's basically like forensically analyzing a crime scene that happened tens or hundreds of thousands of years ago. Higham spends a lot of time talking about the techniques that archaeologists have developed to figure out what happened so long ago, and it blew me away. For example, Higham details the research he and others have been doing at Denisova cave in Russia. The cave has accumulated literally hundreds of thousands of years of dirt and debris on its floor, so researchers have been painstakingly excavating and mapping the layers of sediment. Over the millennia, sediment has shifted, subsided, been overturned, been washed away, etc, but it seems as though the researchers have done a great job of somehow mapping all of the layers and accounting for all of the processes affecting the sediment. The next amazing thing is the genetic research, much of it enabled by Svante Paabo, who just won a Nobel Prize for this type of work. Paabo, Higham and others have developed techniques to extract DNA from tiny, ancient pieces of bone. A lot of their techniques revolve around getting rid of modern DNA that inevitably contaminates ancient samples. For example, certain nucleotides decay into other nucleotides at a somewhat predictable rate over time, so by washing out DNA that has low levels of decayed nucleotides, they can raise their concentrations of ancient DNA.
I'll relate one really cool story that Higham tells. One issue with the Denisova site is that hyenas occupied it for much of its history, and hyenas like to chew up and swallow bones, pooping out little shards that are impossible to identify. Higham and others had the idea to gather these shards and extract and test the DNA of all of them. He had a graduate student do this painstaking work, which resulted in them finding a single shard that had the DNA of a first generation human-Denisovan hybrid.
So how did Denisovans, Neanderthals, and other ancient hominins affect our ancestors? Although much is unknown and may be impossible to know, archaeologists have made a huge amount of progress in figuring out what happened. First of all, what do we know about ancient humans? We know that they originated in Africa, and that by around 50-60,000 years ago they had spread throughout most of Europe, Asia, and Australia. However, there is an increasing amount of evidence that between 120-60k years ago, humans were leaving Africa in dribs and drabs, reaching as far as Sumatra, although these early migrations may not have been ultimately successful. These dates indicate that our species, Homo sapiens, overlapped with many other hominins in both space and time - Neanderthals in Europe and Western Asia, Denisovans in Eastern and Southeastern Asia, Homo naledi and others in Africa, Homo floresiensis in Flores in Indonesia and Homo luzonensis in Luzon in the Philippines, and very likely other unknown hominins (likely remnants of Homo erectus) living in Island Southeast Asia. And it's very likely that we interacted with most of these hominins, teaching and learning from them, and often mating with them.
According to Higham, the evidence in Europe indicates that Neanderthals were surprisingly sophisticated. "In southern Spain, for example, we have evidence for marine resource use amongst Neanderthals, including the hunting and catching of seals, dolphins, fish and shellfish. At sites in Greece and Italy there is evidence of turtle and bird hunting, as well as shell-fishing. ... Neanderthals appear to have eaten lentils, water lilies, pistachio, tubers, wild cereals, figs, mushrooms, pine nuts and mosses, and many more unexpected types of food. They were certainly not exclusively meat eaters. ... One of the Neanderthals from El Sidrón had a tooth abscess. Molecular compounds from yarrow and chamomile were identified in the subject’s dental plaque." Significantly, archaeologists have been finding evidence of Neanderthal art: "At a Neanderthal site in the south of Spain, for example, archaeologists found shells with perforations that enabled them to be worn or displayed. In addition, the remains of pigments were found on and near the shells. These included ochre (red), pyrite (black) and natrojarosite (yellow) minerals. A small bone with pigment present at its tip implies its use in preparing these pigments and mixing them to make different colours, mixed in a larger Spondylus shell container. The remains date to around 115–120,000 years ago, well before Upper Palaeolithic modern humans are present in Europe. In ancient Egypt natrojarosite was used as a cosmetic. Could Neanderthals have been using these various pigments to the same effect or for self- decoration? I think the answer must be yes." "In addition to shells, Neanderthals seem to have had a genuine interest in the feathers of big birds of prey. They may have used them in a decorative and therefore symbolic manner. This evidence is based on the presence in archaeological sites of certain birds’ wing bones that have been clearly cut and sawn by stone tools." In addition, "If the latest dates are reliable then the evidence suggests that Neanderthals, not Homo sapiens, were the first cave painters. Who knows, modern humans might have seen these early representations and copied them?" Furthermore, it seems as though the process of humans replacing Neanderthals was not entirely a one way street - Higham mentions several sites where there was a clear back and forth between humans and Neanderthals over the millennia. So in certain early circumstances at least, Neanderthals were evenly matched with humans. Europeans and Asians seem to have inherited their Neanderthal DNA, amounting to 1-3% of our genomes, from one event/population. Fascinatingly, "More than 20 per cent of the Neanderthal genome can be recovered from modern human populations, perhaps more."
For all of the press that Neanderthals have gotten, Denisovans may have left an even larger legacy in humans, especially in East/Southeast Asians. 4.8% of the Melanesian genome derives from Denisovans, and 0.4-0.8% of Han Chinese and Tibetan genomes are Denisovan. Interestingly, after the discovery of the Denisovan bone fragments about 10 years ago, researchers took second looks at odd archaic human skulls from China and realized that they were probably Denisovan or Denisovan-human hybrid skulls. Fascinatingly, some of these skulls "contain a second molar that has three roots. In non-Asian Homo sapiens this is very rare, seen in less than 3.5 per cent of people, but in Asian people and Native Americans it is much more common: up to 40 per cent of people have it." Fascinatingly, Tibetans have a variant of the EPAS1 gene that is crucial for their ability to deal with the low level of oxygen at high altitudes. It is almost certain that they inherited this variant of EPAS1 from Denisovans (the same variant was found in the DNA of a Denisovan girl). Another fascinating likely genetic legacy of the Denisovans is in the Greenland Inuit - they have variants of two genes that increase the levels of brown fat in adults (fat that is used for generating heat rather than for storing energy). Almost 100% of the Greenland Inuit population has these variants, but they are extremely rare in other human populations - but they are very similar to Denisovan genes. Lastly, it seems as though inhabitants of Island Southeast Asia inherited many Denisovan genes related to immunity - perhaps Denisovans, who had been inhabiting that part of the tropics long before modern humans arrived, passed on immunity-related genes that were useful for surviving the diseases in that part of the world.
Fascinatingly, Higham also talks about research that indicates that there were at least three distinct populations of Denisovans. These populations were very different from each other, perhaps so much that one of them could even be called a different species. Due to the large differences in these populations' genetics, researchers have apparently been able to figure out from the DNA of modern Papuans that there were at least 2 introgressions (interbreeding events) of Denisovans into that population of people, and that these two introgressions were different from the introgression that introduced Denisovan DNA into East Asians. Furthermore, genetic analysis has also indicated that Denisovans themselves likely interbred with other, unknown archaic hominins in their past before interbreeding with humans, meaning that many populations of humans have also inherited genes from those unknown archaic humans.
In summary, as our ancestors left Africa, they didn't spread out into a void. In other words, even though we often interpret leaving Africa as an indication of our intelligence and readiness to conquer the world, earlier hominin species had already done this. As humans entered Europe, they encountered groups of Neanderthals. In South and East Asia, they encountered Denisovans. In Southeast Asia, they encountered not only Denisovans but also Homo floresiensis, Homo luzonensis, and likely several other ancient hominins. Even within Africa, humans were coexisting with other ancient hominins (although Higham doesn't talk much about this). Our ancestors mated with many of these other ancient hominins, leaving us with a permanent genetic legacy. Denisovan genes helped Tibetans live on their high plateau, helped Melanesians and others adapt to the diseases of tropical Southeast Asia, and possibly helped Inuits live in the far north. Neanderthal genes gave us a number of traits including lighter skin and a propensity for diabetes. They also possibly passed on new technologies and innovations to us. What if certain technologies, such as painting or sewing, are actually originally Neanderthal technology and not human technology? In Melanesians, the percent of Neanderthal and Denisovan DNA reaches 7.5%, more than the genetic contribution of a great-great-grandparent. Furthermore, the science of our extinct relatives is in its infancy - it was only discovered that humans contained Neanderthal DNA in 2010, the same year in which the first Denisovan genome was sequenced. In the coming years, it is almost guaranteed that researchers will discover new species of ancient hominin and new relations between us and them.
As I said in the beginning, this book really made me question what it means to be human. First of all, it helped me appreciate how similar all modern humans are to each other. Although modern humans are very diverse, we are all basically siblings compared to how different we were from other hominin species. And even then, we were similar enough to these other hominins to be able to mate with them and possibly learn from them. I learned that I myself have not only Neanderthal but also Denisovan ancestors. Those ancestors may have influenced us more than just genetically, perhaps passing on technological and cultural innovations that affect us to this day. To me this shows that we need to broaden our idea of what it means to be human beyond "Homo sapiens" to at least include our genus as a whole. It seems like a fluke of history that we are now the only surviving hominin. There was a time when there were many species of hominin, including Homo sapiens, living together. Unfortunately we still know almost nothing about those times, but after reading this book I am eagerly waiting for archaeologists to make more discoveries.